Quick reference

Note

This page is intended to serve as a convenient reference of commonly-used commands for those who are already familiar with using the model. Please read the full instruction pages first!

Running FETCH3

Running FETCH3 (without optimization):

python -m fetch3 --config_path <path to your config file>
--data_path <path to your data folder> --output_path <path to your output directory>

Running an optimization:

python -m boa --config-path <your_config_path>

Note

Make sure that you have the fetch3-dev environment activated when you run the model.

Working with git

To see the current state of your git repository:

git status

To stage changes to be committed:

git add <filename>  # Stages a specific file
git add .  # Stages all changed files

To commit changes:

git commit -m "<commit_message>"

To push changes to GitHub:

git push

To merge upstream changes into your branch (run from the branch you want to merge changes into):

git fetch upstream
git merge upstream/develop

To switch to another branch:

git checkout <branch_name>

To create a new branch:

git checkout -b <new_branch_name>

To stash changes (when you have changes you aren’t ready to commit, but want to switch branches):

git stash

To apply changes that were stashed:

git stash pop

Working with conda

To activate the fetch3 environment:

conda activate fetch3-dev