Index

B

BaseParameters (class in fetch3.model_config)

C

calc_Aind_x() (in module fetch3.scaling), [1] calc_delta() (in module fetch3.met_data) calc_esat() (in module fetch3.met_data) (in module fetch3.nhl_transpiration.NHL_functions) calc_gb() (in module fetch3.nhl_transpiration.NHL_functions) calc_gc() (in module fetch3.pm_transpiration) calc_geff() (in module fetch3.nhl_transpiration.NHL_functions) calc_gs() (in module fetch3.pm_transpiration) calc_gs_Leuning() (in module fetch3.nhl_transpiration.NHL_functions) calc_infiltration_rate() (in module fetch3.met_data) calc_Kg() (in module fetch3.nhl_transpiration.NHL_functions) calc_LAD() (in module fetch3.canopy) calc_LAI_vertical() (in module fetch3.nhl_transpiration.NHL_functions) calc_LAIc_sp() (in module fetch3.scaling), [1] calc_mixing_length() (in module fetch3.nhl_transpiration.NHL_functions) calc_model_time_grid() (in module fetch3.met_data) calc_NETRAD() (in module fetch3.met_data) calc_NHL() (in module fetch3.nhl_transpiration.NHL_functions) calc_NHL_timesteps() (in module fetch3.nhl_transpiration.NHL_functions) calc_nighttime_trans() (in module fetch3.nhl_transpiration.NHL_functions) calc_pm_transpiration() (in module fetch3.pm_transpiration)

calc_potential_vangenuchten() (in module fetch3.initial_conditions) calc_rad_attenuation() (in module fetch3.nhl_transpiration.NHL_functions) calc_respiration() (in module fetch3.nhl_transpiration.NHL_functions) calc_root_K() (in module fetch3.roots) calc_sap_storage() (in module fetch3.sapflux) calc_sapflux() (in module fetch3.sapflux) calc_stem_wp_response() (in module fetch3.nhl_transpiration.NHL_functions) calc_transpiration_leaf() (in module fetch3.nhl_transpiration.NHL_functions) calc_transpiration_nhl() (in module fetch3.nhl_transpiration.NHL_functions) calc_vpd_kPa() (in module fetch3.nhl_transpiration.NHL_functions) calc_xylem_cross_sectional_area() (in module fetch3.scaling), [1] calc_xylem_theta() (in module fetch3.sapflux) calc_zenith_angle() (in module fetch3.nhl_transpiration.NHL_functions) combine_outputs() (in module fetch3.model_functions) config_from_groupers() (in module fetch3.model_config) ConfigParams (class in fetch3.model_config) (class in fetch3.nhl_transpiration.nhl_config) convert_sapflux_cm3hr_to_m3s() (in module fetch3.scaling) convert_sapflux_cm3hr_to_mm30min() (in module fetch3.scaling), [1] convert_sapflux_m3s_to_mm30min() (in module fetch3.scaling) convert_trans2d_to_cm3hr() (in module fetch3.scaling) convert_trans_m3s_to_cm3hr() (in module fetch3.scaling)

D

deprecation() (in module fetch3.utils)

F

feddes_root_stress() (in module fetch3.roots) fetch3 module fetch3.canopy module fetch3.generate_config module fetch3.initial_conditions module fetch3.met_data module fetch3.model_config module, [1] fetch3.model_functions module fetch3.model_setup module fetch3.nhl_transpiration module fetch3.nhl_transpiration.main module fetch3.nhl_transpiration.main_standalone module fetch3.nhl_transpiration.nhl_config module

fetch3.nhl_transpiration.NHL_functions module fetch3.optimize module fetch3.pm_transpiration module fetch3.roots module fetch3.run module fetch3.sapflux module fetch3.scaling module, [1] fetch3.tests module fetch3.tests.conftest module fetch3.tests.test_load_config module fetch3.tests.test_loaded_data module fetch3.utils module format_inputs() (in module fetch3.sapflux) format_model_output() (in module fetch3.model_functions)

G

generate_config_from_csv() (in module fetch3.generate_config) get_dt_now_as_str() (in module fetch3.utils)

get_enum() (in module fetch3.model_config), [1] get_multi_config() (in module fetch3.model_config), [1] get_single_config() (in module fetch3.model_config), [1]

I

import_ameriflux_data() (in module fetch3.met_data) initial_conditions() (in module fetch3.initial_conditions)

integrate_trans2d() (in module fetch3.scaling) interp_to_model_res() (in module fetch3.met_data) interpolate_2d() (in module fetch3.utils)

J

jarvis_fd() (in module fetch3.pm_transpiration) jarvis_fleaf() (in module fetch3.pm_transpiration)

jarvis_fs() (in module fetch3.pm_transpiration) jarvis_fTa() (in module fetch3.pm_transpiration)

L

load_yaml() (in module fetch3.utils)

M

main() (in module fetch3.nhl_transpiration.main) make_experiment_directory() (in module fetch3.utils) Met (class in fetch3.met_data) model_config() (in module fetch3.tests.conftest) model_pm_config() (in module fetch3.tests.conftest) ModelOptions (class in fetch3.model_config) module fetch3 fetch3.canopy fetch3.generate_config fetch3.initial_conditions fetch3.met_data fetch3.model_config, [1] fetch3.model_functions fetch3.model_setup fetch3.nhl_transpiration fetch3.nhl_transpiration.main fetch3.nhl_transpiration.main_standalone fetch3.nhl_transpiration.nhl_config fetch3.nhl_transpiration.NHL_functions fetch3.optimize fetch3.pm_transpiration fetch3.roots fetch3.run fetch3.sapflux fetch3.scaling, [1] fetch3.tests fetch3.tests.conftest fetch3.tests.test_load_config fetch3.tests.test_loaded_data fetch3.utils

N

neg2zero() (in module fetch3.utils) NHLModelOptions (class in fetch3.model_config), [1]

NHLParameters (class in fetch3.model_config) night_trans() (in module fetch3.pm_transpiration)

O

opt_model_config() (in module fetch3.tests.conftest)

P

param_groups_config() (in module fetch3.tests.conftest) Picard() (in module fetch3.model_functions) pm_trans() (in module fetch3.pm_transpiration) PMParameters (class in fetch3.model_config)

Porous_media_root() (in module fetch3.model_functions) Porous_media_xylem() (in module fetch3.model_functions) prepare_ameriflux_data() (in module fetch3.met_data) prepare_met_data() (in module fetch3.met_data) pytest_addoption() (in module fetch3.tests.conftest)

R

read_configs() (in module fetch3.nhl_transpiration.nhl_config)

run_single() (in module fetch3.nhl_transpiration.main_standalone) (in module fetch3.run)

S

save_calculated_params() (in module fetch3.model_config) save_csv() (in module fetch3.model_functions) save_nc() (in module fetch3.model_functions) slice_dsall() (in module fetch3.model_functions)

solve_C_closure() (in module fetch3.nhl_transpiration.NHL_functions) solve_leaf_physiology() (in module fetch3.nhl_transpiration.NHL_functions) solve_Uz() (in module fetch3.nhl_transpiration.NHL_functions) spatial_discretization() (in module fetch3.model_setup)

T

temporal_discretization() (in module fetch3.model_setup) test_config_from_groupers() (in module fetch3.tests.test_load_config) test_deprecated_config() (in module fetch3.tests.test_load_config) test_get_multi_config() (in module fetch3.tests.test_load_config)

test_output_data_should_be_the_same_as_previously_stored_data() (in module fetch3.tests.test_loaded_data) thomas_tridiagonal() (in module fetch3.nhl_transpiration.NHL_functions) trans2d_to_tree() (in module fetch3.scaling) TranspirationScheme (class in fetch3.model_config), [1]

V

vanGenuchten() (in module fetch3.model_functions)

verma_root_mass_dist() (in module fetch3.roots)

W

write_nhl_output() (in module fetch3.nhl_transpiration.main)

write_outputs() (in module fetch3.nhl_transpiration.NHL_functions) write_outputs_netcdf() (in module fetch3.nhl_transpiration.NHL_functions)

Z

Zind (class in fetch3.model_setup)